Microbiome (Bacteria, Archaea and fungi) from University Valley Permafrost cores (Antarctica)

http://ipt.biodiversity.aq/resource.do?r=microbiome_university_valley_permafrost_antarctica
Download dataset
organizationName McGill University
bounding Coordinates {"south":"-77.864","north":"-77.864","west":"160.729","east":"160.729"}
abstract Amplicon sequencing dataset (Bacteria and Archaea based on 16S ssu rRNA gene, Fungi and other eukaryotes, based on the ITS marker) of microorganisms in permafrost samples (two cores with three different depths) taken in University Valley, Antarctica.

MiMarks Samples

MiMARKS_sequencing
Structured Comment Name Structured Comment Name_unit units
UVMIT0-5_B UVMIT0-5_B_unit UVMIT0-5_A
UVMIT0-5_F UVMIT0-5_F_unit UVMIT25-30_A
UVMIT25-30_F UVMIT25-30_F_unit UVMIT25-30_B
UVMITsoil_A UVMITsoil_A_unit UVMITsoil_B
UVMITsoil_F UVMITsoil_F_unit UVSIT0-5_B
UVSIT0-5_A UVSIT0-5_A_unit UVSIT0-5_F
UVSIT20-25_B UVSIT20-25_B_unit UVSIT20-25_A
UVSIT20-25_F UVSIT20-25_F_unit UVSIT45-50_B
UVSIT45-50_A UVSIT45-50_A_unit UVSIT45-50_F
UVSITsoil_A UVSITsoil_A_unit UVSITsoil_F
MiMARKS_sequencing
Structured Comment Name Structured Comment Name_unit units
UVMIT0-5_B UVMIT0-5_B_unit UVMIT0-5_A
UVMIT0-5_F UVMIT0-5_F_unit UVMIT25-30_A
UVMIT25-30_F UVMIT25-30_F_unit UVMIT25-30_B
UVMITsoil_A UVMITsoil_A_unit UVMITsoil_B
UVMITsoil_F UVMITsoil_F_unit UVSIT0-5_B
UVSIT0-5_A UVSIT0-5_A_unit UVSIT0-5_F
UVSIT20-25_B UVSIT20-25_B_unit UVSIT20-25_A
UVSIT20-25_F UVSIT20-25_F_unit UVSIT45-50_B
UVSIT45-50_A UVSIT45-50_A_unit UVSIT45-50_F
UVSITsoil_A UVSITsoil_A_unit UVSITsoil_F
MiMARKS_investigation
Structured Comment Name Structured Comment Name_unit units
UVMIT0-5_B UVMIT0-5_B_unit UVMIT0-5_A
UVMIT0-5_F UVMIT0-5_F_unit UVMIT25-30_A
UVMIT25-30_F UVMIT25-30_F_unit UVMIT25-30_B
UVMITsoil_A UVMITsoil_A_unit UVMITsoil_B
UVMITsoil_F UVMITsoil_F_unit UVSIT0-5_B
UVSIT0-5_A UVSIT0-5_A_unit UVSIT0-5_F
UVSIT20-25_B UVSIT20-25_B_unit UVSIT20-25_A
UVSIT20-25_F UVSIT20-25_F_unit UVSIT45-50_B
UVSIT45-50_A UVSIT45-50_A_unit UVSIT45-50_F
UVSITsoil_A UVSITsoil_A_unit UVSITsoil_F
MiMARKS_environment
Structured Comment Name Structured Comment Name_unit units
UVMIT0-5_B UVMIT0-5_B_unit UVMIT0-5_A
UVMIT0-5_F UVMIT0-5_F_unit UVMIT25-30_A
UVMIT25-30_F UVMIT25-30_F_unit UVMIT25-30_B
UVMITsoil_A UVMITsoil_A_unit UVMITsoil_B
UVMITsoil_F UVMITsoil_F_unit UVSIT0-5_B
UVSIT0-5_A UVSIT0-5_A_unit UVSIT0-5_F
UVSIT20-25_B UVSIT20-25_B_unit UVSIT20-25_A
UVSIT20-25_F UVSIT20-25_F_unit UVSIT45-50_B
UVSIT45-50_A UVSIT45-50_A_unit UVSIT45-50_F
UVSITsoil_A UVSITsoil_A_unit UVSITsoil_F
MiMARKS_environment
Structured Comment Name Structured Comment Name_unit units
UVMIT0-5_B UVMIT0-5_B_unit UVMIT0-5_A
UVMIT0-5_F UVMIT0-5_F_unit UVMIT25-30_A
UVMIT25-30_F UVMIT25-30_F_unit UVMIT25-30_B
UVMITsoil_A UVMITsoil_A_unit UVMITsoil_B
UVMITsoil_F UVMITsoil_F_unit UVSIT0-5_B
UVSIT0-5_A UVSIT0-5_A_unit UVSIT0-5_F
UVSIT20-25_B UVSIT20-25_B_unit UVSIT20-25_A
UVSIT20-25_F UVSIT20-25_F_unit UVSIT45-50_B
UVSIT45-50_A UVSIT45-50_A_unit UVSIT45-50_F
UVSITsoil_A UVSITsoil_A_unit UVSITsoil_F
MiMARKS_environment
Structured Comment Name Structured Comment Name_unit units
UVMIT0-5_B UVMIT0-5_B_unit UVMIT0-5_A
UVMIT0-5_F UVMIT0-5_F_unit UVMIT25-30_A
UVMIT25-30_F UVMIT25-30_F_unit UVMIT25-30_B
UVMITsoil_A UVMITsoil_A_unit UVMITsoil_B
UVMITsoil_F UVMITsoil_F_unit UVSIT0-5_B
UVSIT0-5_A UVSIT0-5_A_unit UVSIT0-5_F
UVSIT20-25_B UVSIT20-25_B_unit UVSIT20-25_A
UVSIT20-25_F UVSIT20-25_F_unit UVSIT45-50_B
UVSIT45-50_A UVSIT45-50_A_unit UVSIT45-50_F
UVSITsoil_A UVSITsoil_A_unit UVSITsoil_F
MiMARKS_environment
Structured Comment Name Structured Comment Name_unit units
UVMIT0-5_B UVMIT0-5_B_unit UVMIT0-5_A
UVMIT0-5_F UVMIT0-5_F_unit UVMIT25-30_A
UVMIT25-30_F UVMIT25-30_F_unit UVMIT25-30_B
UVMITsoil_A UVMITsoil_A_unit UVMITsoil_B
UVMITsoil_F UVMITsoil_F_unit UVSIT0-5_B
UVSIT0-5_A UVSIT0-5_A_unit UVSIT0-5_F
UVSIT20-25_B UVSIT20-25_B_unit UVSIT20-25_A
UVSIT20-25_F UVSIT20-25_F_unit UVSIT45-50_B
UVSIT45-50_A UVSIT45-50_A_unit UVSIT45-50_F
UVSITsoil_A UVSITsoil_A_unit UVSITsoil_F
MiMARKS_environment
Structured Comment Name Structured Comment Name_unit units
UVMIT0-5_B UVMIT0-5_B_unit UVMIT0-5_A
UVMIT0-5_F UVMIT0-5_F_unit UVMIT25-30_A
UVMIT25-30_F UVMIT25-30_F_unit UVMIT25-30_B
UVMITsoil_A UVMITsoil_A_unit UVMITsoil_B
UVMITsoil_F UVMITsoil_F_unit UVSIT0-5_B
UVSIT0-5_A UVSIT0-5_A_unit UVSIT0-5_F
UVSIT20-25_B UVSIT20-25_B_unit UVSIT20-25_A
UVSIT20-25_F UVSIT20-25_F_unit UVSIT45-50_B
UVSIT45-50_A UVSIT45-50_A_unit UVSIT45-50_F
UVSITsoil_A UVSITsoil_A_unit UVSITsoil_F
MiMARKS_environment
Structured Comment Name Structured Comment Name_unit units
UVMIT0-5_B UVMIT0-5_B_unit UVMIT0-5_A
UVMIT0-5_F UVMIT0-5_F_unit UVMIT25-30_A
UVMIT25-30_F UVMIT25-30_F_unit UVMIT25-30_B
UVMITsoil_A UVMITsoil_A_unit UVMITsoil_B
UVMITsoil_F UVMITsoil_F_unit UVSIT0-5_B
UVSIT0-5_A UVSIT0-5_A_unit UVSIT0-5_F
UVSIT20-25_B UVSIT20-25_B_unit UVSIT20-25_A
UVSIT20-25_F UVSIT20-25_F_unit UVSIT45-50_B
UVSIT45-50_A UVSIT45-50_A_unit UVSIT45-50_F
UVSITsoil_A UVSITsoil_A_unit UVSITsoil_F
MiMARKS_environment
Structured Comment Name Structured Comment Name_unit units
UVMIT0-5_B UVMIT0-5_B_unit UVMIT0-5_A
UVMIT0-5_F UVMIT0-5_F_unit UVMIT25-30_A
UVMIT25-30_F UVMIT25-30_F_unit UVMIT25-30_B
UVMITsoil_A UVMITsoil_A_unit UVMITsoil_B
UVMITsoil_F UVMITsoil_F_unit UVSIT0-5_B
UVSIT0-5_A UVSIT0-5_A_unit UVSIT0-5_F
UVSIT20-25_B UVSIT20-25_B_unit UVSIT20-25_A
UVSIT20-25_F UVSIT20-25_F_unit UVSIT45-50_B
UVSIT45-50_A UVSIT45-50_A_unit UVSIT45-50_F
UVSITsoil_A UVSITsoil_A_unit UVSITsoil_F
MiMARKS_nucleic_acid_sequence_source
Structured Comment Name Structured Comment Name_unit units
UVMIT0-5_B_unit UVMIT0-5_A_unit UVMIT0-5_F_unit
UVMIT25-30_F_unit UVMIT25-30_B_unit UVMITsoil_A_unit
UVMITsoil_F_unit UVSIT0-5_B_unit UVSIT0-5_A_unit
UVSIT20-25_B_unit UVSIT20-25_A_unit UVSIT20-25_F_unit
UVSIT45-50_A_unit UVSIT45-50_F_unit UVSITsoil_A_unit
MiMARKS_sequencing
Structured Comment Name Structured Comment Name_unit units
UVMIT0-5_B UVMIT0-5_B_unit UVMIT0-5_A
UVMIT0-5_F UVMIT0-5_F_unit UVMIT25-30_A
UVMIT25-30_F UVMIT25-30_F_unit UVMIT25-30_B
UVMITsoil_A UVMITsoil_A_unit UVMITsoil_B
UVMITsoil_F UVMITsoil_F_unit UVSIT0-5_B
UVSIT0-5_A UVSIT0-5_A_unit UVSIT0-5_F
UVSIT20-25_B UVSIT20-25_B_unit UVSIT20-25_A
UVSIT20-25_F UVSIT20-25_F_unit UVSIT45-50_B
UVSIT45-50_A UVSIT45-50_A_unit UVSIT45-50_F
UVSITsoil_A UVSITsoil_A_unit UVSITsoil_F
MiMARKS_sequencing
Structured Comment Name Structured Comment Name_unit units
UVMIT0-5_B_unit UVMIT0-5_A_unit UVMIT0-5_F
UVMIT25-30_A_unit UVMIT25-30_F UVMIT25-30_F_unit
UVMITsoil_A_unit UVMITsoil_B_unit UVMITsoil_F
UVSIT0-5_B_unit UVSIT0-5_A_unit UVSIT0-5_F
UVSIT20-25_B_unit UVSIT20-25_A_unit UVSIT20-25_F
UVSIT45-50_B_unit UVSIT45-50_A_unit UVSIT45-50_F
UVSITsoil_A_unit UVSITsoil_F UVSITsoil_F_unit
MiMARKS_sequencing
Structured Comment Name Structured Comment Name_unit units
UVMIT0-5_B UVMIT0-5_B_unit UVMIT0-5_A
UVMIT0-5_F UVMIT0-5_F_unit UVMIT25-30_A
UVMIT25-30_F UVMIT25-30_F_unit UVMIT25-30_B
UVMITsoil_A UVMITsoil_A_unit UVMITsoil_B
UVMITsoil_F UVMITsoil_F_unit UVSIT0-5_B
UVSIT0-5_A UVSIT0-5_A_unit UVSIT0-5_F
UVSIT20-25_B UVSIT20-25_B_unit UVSIT20-25_A
UVSIT20-25_F UVSIT20-25_F_unit UVSIT45-50_B
UVSIT45-50_A UVSIT45-50_A_unit UVSIT45-50_F
UVSITsoil_A UVSITsoil_A_unit UVSITsoil_F
package_soil
Structured Comment Name Structured Comment Name_unit units
UVMIT0-5_B UVMIT0-5_B_unit UVMIT0-5_A
UVMIT0-5_F UVMIT0-5_F_unit UVMIT25-30_A
UVMIT25-30_F UVMIT25-30_F_unit UVMIT25-30_B
UVMITsoil_A UVMITsoil_A_unit UVMITsoil_B
UVMITsoil_F UVMITsoil_F_unit UVSIT0-5_B
UVSIT0-5_A UVSIT0-5_A_unit UVSIT0-5_F
UVSIT20-25_B UVSIT20-25_B_unit UVSIT20-25_A
UVSIT20-25_F UVSIT20-25_F_unit UVSIT45-50_B
UVSIT45-50_A UVSIT45-50_A_unit UVSIT45-50_F
UVSITsoil_A UVSITsoil_A_unit UVSITsoil_F
package_soil
Structured Comment Name Structured Comment Name_unit units
UVMIT0-5_B UVMIT0-5_B_unit UVMIT0-5_A
UVMIT0-5_F UVMIT0-5_F_unit UVMIT25-30_A
UVMIT25-30_F UVMIT25-30_F_unit UVMIT25-30_B
UVMITsoil_A UVMITsoil_A_unit UVMITsoil_B
UVMITsoil_F UVMITsoil_F_unit UVSIT0-5_B
UVSIT0-5_A UVSIT0-5_A_unit UVSIT0-5_F
UVSIT20-25_B UVSIT20-25_B_unit UVSIT20-25_A
UVSIT20-25_F UVSIT20-25_F_unit UVSIT45-50_B
UVSIT45-50_A UVSIT45-50_A_unit UVSIT45-50_F
UVSITsoil_A UVSITsoil_A_unit UVSITsoil_F
miscellaneous
Structured Comment Name Structured Comment Name_unit units
UVMIT0-5_B UVMIT0-5_B_unit UVMIT0-5_A
UVMIT0-5_F UVMIT0-5_F_unit UVMIT25-30_A
UVMIT25-30_F UVMIT25-30_F_unit UVMIT25-30_B
UVMITsoil_A UVMITsoil_A_unit UVMITsoil_B
UVMITsoil_F UVMITsoil_F_unit UVSIT0-5_B
UVSIT0-5_A UVSIT0-5_A_unit UVSIT0-5_F
UVSIT20-25_B UVSIT20-25_B_unit UVSIT20-25_A
UVSIT20-25_F UVSIT20-25_F_unit UVSIT45-50_B
UVSIT45-50_A UVSIT45-50_A_unit UVSIT45-50_F
UVSITsoil_A UVSITsoil_A_unit UVSITsoil_F
miscellaneous
Structured Comment Name Structured Comment Name_unit units
UVMIT0-5_B UVMIT0-5_B_unit UVMIT0-5_A
UVMIT0-5_F UVMIT0-5_F_unit UVMIT25-30_A
UVMIT25-30_F UVMIT25-30_F_unit UVMIT25-30_B
UVMITsoil_A UVMITsoil_A_unit UVMITsoil_B
UVMITsoil_F UVMITsoil_F_unit UVSIT0-5_B
UVSIT0-5_A UVSIT0-5_A_unit UVSIT0-5_F
UVSIT20-25_B UVSIT20-25_B_unit UVSIT20-25_A
UVSIT20-25_F UVSIT20-25_F_unit UVSIT45-50_B
UVSIT45-50_A UVSIT45-50_A_unit UVSIT45-50_F
UVSITsoil_A UVSITsoil_A_unit UVSITsoil_F
miscellaneous
Structured Comment Name Structured Comment Name_unit units
UVMIT0-5_B UVMIT0-5_B_unit UVMIT0-5_A
UVMIT0-5_F UVMIT0-5_F_unit UVMIT25-30_A
UVMIT25-30_F UVMIT25-30_F_unit UVMIT25-30_B
UVMITsoil_A UVMITsoil_A_unit UVMITsoil_B
UVMITsoil_F UVMITsoil_F_unit UVSIT0-5_B
UVSIT0-5_A UVSIT0-5_A_unit UVSIT0-5_F
UVSIT20-25_B UVSIT20-25_B_unit UVSIT20-25_A
UVSIT20-25_F UVSIT20-25_F_unit UVSIT45-50_B
UVSIT45-50_A UVSIT45-50_A_unit UVSIT45-50_F
UVSITsoil_A UVSITsoil_A_unit UVSITsoil_F
package_sediment
Structured Comment Name Structured Comment Name_unit units
UVMIT0-5_B_unit UVMIT0-5_A_unit UVMIT0-5_F_unit
UVMIT25-30_F_unit UVMIT25-30_B_unit UVMITsoil_A
UVMITsoil_B UVMITsoil_B_unit UVMITsoil_F
UVSIT0-5_B UVSIT0-5_B_unit UVSIT0-5_A
UVSIT0-5_F UVSIT0-5_F_unit UVSIT20-25_B
UVSIT20-25_A UVSIT20-25_A_unit UVSIT20-25_F
UVSIT45-50_B UVSIT45-50_B_unit UVSIT45-50_A
UVSIT45-50_F UVSIT45-50_F_unit UVSITsoil_A
UVSITsoil_F UVSITsoil_F_unit UVSITsoil_B
package_sediment
Structured Comment Name Structured Comment Name_unit units
UVMIT0-5_B_unit UVMIT0-5_A_unit UVMIT0-5_F_unit
UVMIT25-30_F_unit UVMIT25-30_B_unit UVMITsoil_A
UVMITsoil_B UVMITsoil_B_unit UVMITsoil_F
UVSIT0-5_B UVSIT0-5_B_unit UVSIT0-5_A
UVSIT0-5_F UVSIT0-5_F_unit UVSIT20-25_B
UVSIT20-25_A UVSIT20-25_A_unit UVSIT20-25_F
UVSIT45-50_B UVSIT45-50_B_unit UVSIT45-50_A
UVSIT45-50_F UVSIT45-50_F_unit UVSITsoil_A
UVSITsoil_F UVSITsoil_F_unit UVSITsoil_B
package_soil
Structured Comment Name Structured Comment Name_unit units
UVMIT0-5_B_unit UVMIT0-5_A_unit UVMIT0-5_F_unit
UVMIT25-30_F_unit UVMIT25-30_B_unit UVMITsoil_A
UVMITsoil_B UVMITsoil_B_unit UVMITsoil_F
UVSIT0-5_B UVSIT0-5_B_unit UVSIT0-5_A
UVSIT0-5_F UVSIT0-5_F_unit UVSIT20-25_B
UVSIT20-25_A UVSIT20-25_A_unit UVSIT20-25_F
UVSIT45-50_B UVSIT45-50_B_unit UVSIT45-50_A
UVSIT45-50_F UVSIT45-50_F_unit UVSITsoil_A
UVSITsoil_F UVSITsoil_F_unit UVSITsoil_B
package_soil
Structured Comment Name Structured Comment Name_unit units
UVMIT0-5_B_unit UVMIT0-5_A_unit UVMIT0-5_F_unit
UVMIT25-30_F_unit UVMIT25-30_B_unit UVMITsoil_A
UVMITsoil_B UVMITsoil_B_unit UVMITsoil_F
UVSIT0-5_B UVSIT0-5_B_unit UVSIT0-5_A
UVSIT0-5_F UVSIT0-5_F_unit UVSIT20-25_B
UVSIT20-25_A UVSIT20-25_A_unit UVSIT20-25_F
UVSIT45-50_B UVSIT45-50_B_unit UVSIT45-50_A
UVSIT45-50_F UVSIT45-50_F_unit UVSITsoil_A
UVSITsoil_F UVSITsoil_F_unit UVSITsoil_B
miscellaneous
Structured Comment Name Structured Comment Name_unit units
UVMIT0-5_B_unit UVMIT0-5_A_unit UVMIT0-5_F_unit
UVMIT25-30_F_unit UVMIT25-30_B_unit UVMITsoil_A
UVMITsoil_B UVMITsoil_B_unit UVMITsoil_F
UVSIT0-5_B UVSIT0-5_B_unit UVSIT0-5_A
UVSIT0-5_F UVSIT0-5_F_unit UVSIT20-25_B
UVSIT20-25_A UVSIT20-25_A_unit UVSIT20-25_F
UVSIT45-50_B UVSIT45-50_B_unit UVSIT45-50_A
UVSIT45-50_F UVSIT45-50_F_unit UVSITsoil_A
UVSITsoil_F UVSITsoil_F_unit UVSITsoil_B

Sequence sets

2009-12
study_type target_gene target_taxa
forward_primer reverse_primer forward_primer_sequence
genbank_contigs sequencing_technology has_next_generation_sequence_output_data
sra_accession_number sra_project_number sra_run_number
number_of_spots_in_sra number_of_bases_predicted dataset_id
2009-12
study_type target_gene target_taxa
reverse_primer forward_primer_sequence reverse_primer_sequence
sequencing_technology has_next_generation_sequence_output_data url_data_repository
sra_project_number sra_run_number sra_sample_accession_numbers
number_of_bases_predicted dataset_id created_at
Position: