Antarctic Peninsula Bacterioplankton 16S rRNA gene surveys and metagenomes from Winter 2002 and Summer 2006.

http://ipt.biodiversity.aq/resource.do?r=antarctic_peninsula_bacterioplankton_diversity
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organizationName http://www.dri.edu/alison-murray
bounding Coordinates {"south":"-64.78","north":"-64.77","west":"-64.07","east":"-64.05"}
abstract Antarctic surface oceans are well-studied during summer when irradiance levels are high, sea ice is melting and primary productivity is at a maximum. Coincident with this timing, the bacterioplankton respond with significant increases in secondary productivity. Little is known about bacterioplankton in winter when darkness and sea-ice cover inhibit photoautotrophic primary production. We report here an environmental genomic and small subunit ribosomal RNA (SSU rRNA) analysis of winter and summer Antarctic Peninsula coastal seawater bacterioplankton. Intense inter-seasonal differences were reflected through shifts in community composition and functional capacities encoded in winter and summer environmental genomes with significantly higher phylogenetic and functional diversity in winter. In general, inferred metabolisms of summer bacterioplankton were characterized by chemoheterotrophy, photoheterotrophy and aerobic anoxygenic photosynthesis while the winter community included the capacity for bacterial and archaeal chemolithoautotrophy. Chemolithoautotrophic pathways were dominant in winter and were similar to those recently reported in global‘dark ocean’ mesopelagic waters. If chemolithoautotrophy is widespread in the Southern Ocean in winter, this process may be a previously unaccounted carbon sink and may help account for the unexplained anomalies in surface inorganic nitrogen content.

MiMarks Samples

PalB_Bact_28Feb2006
submitted_to_insdc investigation_type experimental_factor
lat_lon collection_date biome
material env_package target_gene
depth depth_unit chlorophyll
diss_org_carb diss_org_carb_unit organism_count
phosphate phosphate_unit primary_prod
salinity salinity_unit silicate
temp temp_unit nitrate+nitrite
Leu_incorp_rate Leu_incorp_rate_unit Thy_incorp_rate
SWI_Arch_20Aug2002
submitted_to_insdc investigation_type experimental_factor
lat_lon collection_date biome
material env_package target_gene
depth depth_unit chlorophyll
SWI_MG_20Aug2002
submitted_to_insdc investigation_type experimental_factor
lat_lon collection_date biome
material env_package seq_meth
depth_unit chlorophyll chlorophyll_unit
SWI_Bact454_17Jan2002
submitted_to_insdc investigation_type experimental_factor
collection_date biome feature
env_package target_gene seq_meth
SWI_Bact454_20Aug2002
submitted_to_insdc investigation_type experimental_factor
lat_lon collection_date biome
material env_package target_gene
depth depth_unit chlorophyll
SWI_Bact454_17Jul2002
submitted_to_insdc investigation_type experimental_factor
lat_lon collection_date biome
material env_package target_gene
depth depth_unit chlorophyll
PalB_MG_28Feb2006
submitted_to_insdc investigation_type experimental_factor
lat_lon collection_date biome
material env_package seq_meth
depth_unit chlorophyll chlorophyll_unit
diss_org_carb_unit organism_count organism_count_unit
phosphate_unit primary_prod primary_prod_unit
salinity_unit silicate silicate_unit
temp_unit nitrate+nitrite nitrate+nitrite_unit
SWI_Bact_20Aug2002
submitted_to_insdc investigation_type experimental_factor
lat_lon collection_date biome
material env_package target_gene
depth depth_unit chlorophyll
PalB_Bact454_28Feb2006
submitted_to_insdc investigation_type experimental_factor
lat_lon collection_date biome
material env_package target_gene
depth depth_unit chlorophyll
diss_org_carb diss_org_carb_unit organism_count
phosphate phosphate_unit primary_prod
salinity salinity_unit silicate
temp temp_unit nitrate+nitrite
Leu_incorp_rate Leu_incorp_rate_unit Thy_incorp_rate

Sequence sets

SWI_Bact_20Aug2002
collection_date study_type target_gene
region_targeted forward_primer reverse_primer
reverse_primer_sequence primer_5 primer_3
metagenome_sequencing_approach sequencing_technology seq_yr
output_filetype_for_next_generation_sequence_data sequence_data_repository dataset_id
SWI_Bact454_17Jan2002
collection_date study_type target_gene
region_targeted forward_primer reverse_primer
reverse_primer_sequence primer_5 primer_3
metagenome_sequencing_approach sequencing_technology seq_yr
output_filetype_for_next_generation_sequence_data has_next_generation_sequence_output_data sequence_data_repository
SWI_Bact454_17Jul2002
collection_date study_type target_gene
region_targeted forward_primer reverse_primer
reverse_primer_sequence primer_5 primer_3
metagenome_sequencing_approach sequencing_technology seq_yr
output_filetype_for_next_generation_sequence_data has_next_generation_sequence_output_data sequence_data_repository
PalB_Bact454_28Feb2006
collection_date study_type target_gene
region_targeted forward_primer reverse_primer
reverse_primer_sequence primer_5 primer_3
metagenome_sequencing_approach sequencing_technology seq_yr
output_filetype_for_next_generation_sequence_data has_next_generation_sequence_output_data sequence_data_repository
PALB_Bact_28Feb2006
collection_date study_type target_gene
region_targeted forward_primer reverse_primer
reverse_primer_sequence primer_5 primer_3
metagenome_sequencing_approach sequencing_technology seq_yr
output_filetype_for_next_generation_sequence_data sequence_data_repository dataset_id
PALB_MG_28Feb2006
collection_date study_type target_gene
region_targeted forward_primer reverse_primer
reverse_primer_sequence genbank_contigs metagenome_sequencing_approach
seq_yr run_type output_filetype_for_next_generation_sequence_data
sequence_data_repository dataset_id created_at
SWI_Arch_20Aug2002
collection_date study_type target_gene
region_targeted forward_primer reverse_primer
reverse_primer_sequence genbank_contigs metagenome_sequencing_approach
seq_yr run_type output_filetype_for_next_generation_sequence_data
dataset_id created_at updated_at
SWI_MG_20Aug2002
collection_date study_type target_gene
region_targeted forward_primer reverse_primer
reverse_primer_sequence genbank_contigs metagenome_sequencing_approach
seq_yr run_type output_filetype_for_next_generation_sequence_data
sequence_data_repository dataset_id created_at
SWI_Bact454_20Aug2002
collection_date study_type target_gene
region_targeted forward_primer reverse_primer
reverse_primer_sequence primer_5 primer_3
metagenome_sequencing_approach sequencing_technology seq_yr
output_filetype_for_next_generation_sequence_data has_next_generation_sequence_output_data sequence_data_repository
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